Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&TCTGGCTTCCAGGCCAGGTG
(((((((........((((...&))))........))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001301101
GeneSymbolPPCDC
Binding site1874,1894
Score0.846
Seed1
Au0.368
Energy-16.2
Binding len20
Me-17.603
Phylopstem0.5128200785714286
Phylopflank0.03024411562499997
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure