Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGGCTCCTTTCTGGGTAGA&GCCTAGGAAGGTCCCCAGGATCGGCTGAGAGCCCTGGTGG
(((((((((((((((((((...&)))))))))))..................))))..)))).
Details
MiRNAhsa-miR-892b
RefseqIDNM_001302753
GeneSymbolCD40
Binding site619,659
Score0.923
Seed1
Au0.412
Energy-23.4
Binding len40
Me-3.938
Phylopstem0.3081127982051282
Phylopflank0.5275335376250003
Longest consecutive pairings11
Position of longest consecutive pairings29
Pairings in 3prime end5
PositionCDS
2D Structure