Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GTCGCTTGTGCTGGCCAGGTG
(((((((.(((((.((.(((..&))))))))))...))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001318374
GeneSymbolPCDH9
Binding site4715,4736
Score0.846
Seed1
Au0.412
Energy-17.5
Binding len21
Me-7.108
Phylopstem0.42059218428571427
Phylopflank0.14040368800000003
Longest consecutive pairings10
Position of longest consecutive pairings11
Pairings in 3prime end5
Position3UTR
2D Structure