Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&AGATGTATAGCTGTGATTAAGCTGCATATGTATGCTGGGA
.(((((((((((((((((.(((&.))))))))).))))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001330164
GeneSymbolHSPA12A
Binding site5554,5594
Score1.0
Seed1
Au0.603
Energy-22.2
Binding len23
Me-3.793
Phylopstem2.797368416666666
Phylopflank2.841135922375001
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure