Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&CTGCGGAGGCTTCATGCCTGTGTTTGTGCTAGGA
.(((((((((.(((((((....&.)))))))))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_000083
GeneSymbolCLCN1
Binding site1541,1575
Score0.923
Seed1
Au0.485
Energy-15.8
Binding len18
Me-6.618
Phylopstem6.58496
Phylopflank5.625981555
Longest consecutive pairings16
Position of longest consecutive pairings1
Pairings in 3prime end4
PositionCDS
2D Structure