Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&AAATCTGTACATGTCTCCCATCAGAAAGATTCATTGGCATGCCACAGGG
.((((((((.((((((((((((&)))))))........................)))))..))))))..)).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_000090
GeneSymbolCOL3A1
Binding site5271,5320
Score0.846
Seed1
Au0.529
Energy-15.4
Binding len49
Me-5.036
Phylopstem1.0168199777777778
Phylopflank1.3616937900000001
Longest consecutive pairings7
Position of longest consecutive pairings42
Pairings in 3prime end8
Position3UTR
2D Structure