Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GGGTCTGCCCTTGAGTGGCCTTCCGTGGAGGGTGTGTGACCAGGTG
((((((((((((..((((((((&))))))))........................)))))).)))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_000193
GeneSymbolSHH
Binding site3834,3880
Score0.846
Seed1
Au0.324
Energy-21.0
Binding len46
Me-6.084
Phylopstem5.24894076923077
Phylopflank4.53606903375
Longest consecutive pairings8
Position of longest consecutive pairings38
Pairings in 3prime end8
Position3UTR
2D Structure