Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGGCTCCTTTCTGGGTAGA&GCCCAGAGGAGGTACATGGAGGACAGTGT
(((((.(((((((((((((...&)))))))))........))))..))))).
Details
MiRNAhsa-miR-892b
RefseqIDNM_001040169
GeneSymbolHTR4
Binding site1332,1361
Score0.846
Seed0
Au0.381
Energy-23.5
Binding len29
Me-5.839
Phylopstem1.400962504761905
Phylopflank2.4178611625000004
Longest consecutive pairings9
Position of longest consecutive pairings20
Pairings in 3prime end5
Position3UTR
2D Structure