Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTGCGGCTGCTGTGCTATCATTCTGGCTGA
...((((((((((((((((((&)))))))))))))..............))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001348253
GeneSymbolSLC6A1
Binding site390,423
Score0.923
Seed0
Au0.456
Energy-24.2
Binding len33
Me-6.515
Phylopstem4.29738296875
Phylopflank4.1423970075
Longest consecutive pairings13
Position of longest consecutive pairings20
Pairings in 3prime end8
Position5UTR
2D Structure