Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TCTTGCTGCCGGAGCTTGGCAC
.(((((((.((((.((((((.&)))))).)))).))))..))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_152686
GeneSymbolDNAJC18
Binding site3858,3880
Score0.846
Seed1
Au0.515
Energy-22.5
Binding len22
Me-5.707
Phylopstem2.2554585555555553
Phylopflank1.06267161125
Longest consecutive pairings6
Position of longest consecutive pairings16
Pairings in 3prime end6
Position3UTR
2D Structure