Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGGCTCCTTTCTGGGTAGA&TCTCCTCCAGTTGATAGAGAAAAACAACCCAGCGAAGGCGCCT
....(((.(((((((((((...&.)))))).))))).))).
Details
MiRNAhsa-miR-892b
RefseqIDNM_152739
GeneSymbolHOXA9
Binding site560,603
Score0.923
Seed0
Au0.529
Energy-22.6
Binding len18
Me-11.86
Phylopstem3.6356292500000005
Phylopflank2.4573536999999996
Longest consecutive pairings6
Position of longest consecutive pairings11
Pairings in 3prime end5
PositionCDS
2D Structure