Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTTTTATAATGCACAACTGTTGATGGTAGGCTGTAT
.((((((((((((((((((((&)))))..........))))))))........))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_152739
GeneSymbolHOXA9
Binding site1243,1282
Score0.846
Seed1
Au0.706
Energy-19.2
Binding len39
Me-3.793
Phylopstem4.82827897368421
Phylopflank6.3573672625
Longest consecutive pairings8
Position of longest consecutive pairings16
Pairings in 3prime end8
Position3UTR
2D Structure