Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTATGATTGTAAAGTAGCTGTAAG
((((((((((((((((.((((&)))))))))).....)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_152739
GeneSymbolHOXA9
Binding site1534,1560
Score0.846
Seed1
Au0.721
Energy-18.2
Binding len26
Me-3.938
Phylopstem3.3857510000000004
Phylopflank3.0054692749999994
Longest consecutive pairings10
Position of longest consecutive pairings16
Pairings in 3prime end7
Position3UTR
2D Structure