Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GAATCACAGGGCCAGGTGGTGCCCCCTGCTCTGAATGCCAGGTC
(((((((((.((..((((....&.))))..)).))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_152753
GeneSymbolSCUBE3
Binding site1982,2026
Score0.846
Seed1
Au0.412
Energy-22.1
Binding len20
Me-7.326
Phylopstem3.279803222222222
Phylopflank3.858851491375
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end4
PositionCDS
2D Structure