Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACAACTGGAAGCTGCT
..((((((.(((((((.....&)))))))..)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_152854
GeneSymbolCD40
Binding site1208,1224
Score0.923
Seed1
Au0.544
Energy-19.4
Binding len16
Me-6.013
Phylopstem-0.011905142857142868
Phylopflank-0.015997014999999976
Longest consecutive pairings7
Position of longest consecutive pairings9
Pairings in 3prime end3
Position3UTR
2D Structure