Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACTTTGCAGACAGGTTTGGCCGTAAGCTGTG
..(((((((((((((((((((&))))))))..........)))))).))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_153187
GeneSymbolSLC22A1
Binding site623,654
Score0.923
Seed1
Au0.441
Energy-21.3
Binding len31
Me-4.957
Phylopstem2.8379797666666664
Phylopflank2.30260488425
Longest consecutive pairings8
Position of longest consecutive pairings23
Pairings in 3prime end8
PositionCDS
2D Structure