Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTGGTCAGCCAGCAGCTCCAT
.((.(((((((((((..(((.&)))...))))).)))))).)).
Details
MiRNAhsa-miR-5047
RefseqIDNM_153210
GeneSymbolUSP43
Binding site2259,2281
Score0.846
Seed0
Au0.368
Energy-21.4
Binding len22
Me-7.058
Phylopstem3.376519416666667
Phylopflank3.62019835375
Longest consecutive pairings6
Position of longest consecutive pairings4
Pairings in 3prime end5
PositionCDS
2D Structure