Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTCTACAGCTACAGCTTCCACACAGACGCAGC
(((((((((.((((((((((.&))).))))))).)))))...........)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001330498
GeneSymbolHMBOX1
Binding site588,621
Score0.846
Seed1
Au0.456
Energy-18.9
Binding len33
Me-5.18
Phylopstem3.933250781818181
Phylopflank3.4487990225
Longest consecutive pairings7
Position of longest consecutive pairings22
Pairings in 3prime end7
PositionCDS
2D Structure