Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCCACGGCCGCGGTAACAGGGCTTCGTCTTCTTTGCAGA
((((((((((((((((..(((&))).)))))))))))...................))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001349021
GeneSymbolNME9
Binding site473,513
Score0.897
Seed1
Au0.412
Energy-21.8
Binding len40
Me-3.938
Phylopstem-0.31227699428571437
Phylopflank-0.10620291000000005
Longest consecutive pairings11
Position of longest consecutive pairings25
Pairings in 3prime end6
Position5UTR
2D Structure