Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACTTTACAGGGTCGCTAGCTAGTAGG
(((((((((((((((((((((&)))))))))..)))).)))).)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_153633
GeneSymbolHOXC4
Binding site1,27
Score0.846
Seed1
Au0.554
Energy-19.5
Binding len26
Me-3.938
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings9
Position of longest consecutive pairings17
Pairings in 3prime end8
Position5UTR
2D Structure