Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCGCAGCCTGACCATCTCCATTGTAGCTGCAGC
((((((((((((((((..(((&)))))))))..............)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_153676
GeneSymbolUSH1C
Binding site950,984
Score0.846
Seed1
Au0.382
Energy-22.9
Binding len34
Me-3.938
Phylopstem3.8512300566666657
Phylopflank3.28578727875
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure