Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CTTGCGGAAGCTGTTGGATGATGAGCAGCCCCTGCGGCTGCGGC
((((((((((((((((.....&.))))))...)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_170713
GeneSymbolRASSF1
Binding site685,729
Score0.846
Seed1
Au0.324
Energy-24.0
Binding len21
Me-3.938
Phylopstem0.7991295578947367
Phylopflank0.9165513275000003
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end3
PositionCDS
2D Structure