Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGGCTCCTTTCTGGGTAGA&TCTACAATCTATTTATTGGACATGTCCATGACCAGAAGGGAAACAGTC
.((((..((((((((((.....&.))))))))))..)))).
Details
MiRNAhsa-miR-892b
RefseqIDNM_170735
GeneSymbolBDNF
Binding site1980,2028
Score0.846
Seed0
Au0.618
Energy-23.2
Binding len18
Me-7.238
Phylopstem0.6003534
Phylopflank0.6594670162499998
Longest consecutive pairings10
Position of longest consecutive pairings7
Pairings in 3prime end3
Position3UTR
2D Structure