Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGTCAACTGCTTTTCAGCAGTGGACTGCAGG
(((((((((((((((..((((&))))..)))))))...........)).)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_171825
GeneSymbolCAMK2A
Binding site3965,3999
Score0.846
Seed1
Au0.456
Energy-22.1
Binding len34
Me-4.171
Phylopstem5.963475666666666
Phylopflank5.6918196375
Longest consecutive pairings7
Position of longest consecutive pairings21
Pairings in 3prime end6
Position3UTR
2D Structure