Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGGCTCCTTTCTGGGTAGA&TCTACCCAAGAGAGTCAGCCCTTAATTCTCAGGTGA
((((((((.(((((((((((((&)))))))).)))))..))))...........)))).
Details
MiRNAhsa-miR-892b
RefseqIDNM_171998
GeneSymbolRAB39B
Binding site2282,2318
Score0.846
Seed1
Au0.544
Energy-24.6
Binding len36
Me-4.994
Phylopstem0.3011210899857143
Phylopflank0.4830728301162499
Longest consecutive pairings8
Position of longest consecutive pairings28
Pairings in 3prime end8
Position3UTR
2D Structure