Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCGCCAACTGCAGCTC
....(((((((((((...(((&)))..))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_172377
GeneSymbolCTAG2
Binding site488,505
Score0.846
Seed0
Au0.412
Energy-21.3
Binding len17
Me-9.78
Phylopstem1.065610272727273
Phylopflank1.7816360812499996
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure