Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCGGGCCCAGCTGCT
..(((((((.((((...((((&))))..))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_173050
GeneSymbolSCUBE1
Binding site1522,1540
Score0.923
Seed1
Au0.338
Energy-22.2
Binding len18
Me-7.168
Phylopstem-0.46430732857142853
Phylopflank-0.3669346956944444
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure