Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CTTTATATAGGTCAGTCTTGCAAGTACCATTTTATAAGCAGCTGTGAA
((((((((((((((((((((.&.)))))))...))).........)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_173177
GeneSymbolC1D
Binding site731,779
Score0.923
Seed1
Au0.676
Energy-21.6
Binding len34
Me-3.938
Phylopstem4.600941375
Phylopflank5.25521954375
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure