Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTATCCAAACTGCAGATGTTGCT
..(((((((((((((((((((&)))))))...)))))))...))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_173495
GeneSymbolPTCHD1
Binding site3027,3053
Score0.846
Seed1
Au0.544
Energy-20.9
Binding len26
Me-4.957
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings7
Position of longest consecutive pairings19
Pairings in 3prime end8
Position3UTR
2D Structure