Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTATAAACCACTTAACCTGATTCTGTGACAGTTGCAT
.((((((((((((((((((((&))))))))).)).................).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_175038
GeneSymbolCNTN1
Binding site3333,3373
Score0.846
Seed1
Au0.603
Energy-19.8
Binding len40
Me-3.793
Phylopstem4.271519743589743
Phylopflank3.1228772874999997
Longest consecutive pairings9
Position of longest consecutive pairings31
Pairings in 3prime end8
Position3UTR
2D Structure