Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ATTTTGCACAAGCCAGCAGCTATGCAGA
(((((((((((((((((((((&))))))))...))).))))))..)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_175605
GeneSymbolIFT88
Binding site1728,1756
Score0.846
Seed1
Au0.603
Energy-20.8
Binding len28
Me-3.938
Phylopstem4.87689927037037
Phylopflank3.6572032812499997
Longest consecutive pairings8
Position of longest consecutive pairings20
Pairings in 3prime end8
PositionCDS
2D Structure