Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTTCATGCGTAGTAAACGGGCTGCAGA
(((((((((((..((.(((((&))))).))..)))........)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_175729
GeneSymbolSSX4
Binding site249,279
Score0.846
Seed1
Au0.485
Energy-19.4
Binding len30
Me-8.807
Phylopstem0.4130899736842106
Phylopflank0.6586782762499998
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end7
PositionCDS
2D Structure