Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TACAGCCGCAAGGAGGAGGAGTGCCAGGCAGGGGCTGCC
..(((((((((((((((....&)))))))))).......................))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_176096
GeneSymbolCDK5RAP3
Binding site460,499
Score0.923
Seed1
Au0.353
Energy-21.6
Binding len39
Me-4.957
Phylopstem3.134687184210526
Phylopflank3.39626187875
Longest consecutive pairings10
Position of longest consecutive pairings29
Pairings in 3prime end4
PositionCDS
2D Structure