Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGCAGCTCGCCATCCGCAACGACGAGGAGTTAAACAAGCTGCT
..((((((((((((((.((((&))))))))).)))..........................)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_177925
GeneSymbolH2AJ
Binding site313,359
Score0.923
Seed1
Au0.382
Energy-21.1
Binding len46
Me-4.957
Phylopstem0.6220549902439024
Phylopflank0.38917135999999997
Longest consecutive pairings9
Position of longest consecutive pairings37
Pairings in 3prime end7
PositionCDS
2D Structure