Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ATTTTGCCAGCCAAATGCCAAGGCAGTTGTAGG
(((((((((((((((((((((&))))))).))))..........)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_178010
GeneSymbolSOX5
Binding site2859,2892
Score1.0
Seed1
Au0.603
Energy-19.3
Binding len33
Me-3.938
Phylopstem5.167655118749999
Phylopflank5.488546534999999
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end8
Position3UTR
2D Structure