Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGTTGCAACCCCATCCAGGAGACATATTTCCAGCAGCTGGCAC
.((((((((((((((((((((&))))..)))))))......................))))))).)).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001349901
GeneSymbolHPS4
Binding site2608,2654
Score0.846
Seed1
Au0.397
Energy-22.8
Binding len46
Me-3.793
Phylopstem1.886581504444445
Phylopflank1.74805533875
Longest consecutive pairings7
Position of longest consecutive pairings33
Pairings in 3prime end8
PositionCDS
2D Structure