Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGCCAATTTATGTCAAGACTGTATTTGCAAAGGGAGCAGCTGCAGA
((((((((((..(((((((..&.))))))).....)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001350145
GeneSymbolPATJ
Binding site5578,5627
Score0.846
Seed1
Au0.529
Energy-22.8
Binding len24
Me-10.109
Phylopstem6.128347000000001
Phylopflank5.23321623
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure