Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&CTGCATGGAAGCCAGGTG
(((((((...(.((((((....&)))))))...))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_181509
GeneSymbolMAP1LC3A
Binding site30,48
Score0.846
Seed1
Au0.441
Energy-19.7
Binding len18
Me-11.897
Phylopstem-0.208316
Phylopflank0.07444122333333333
Longest consecutive pairings7
Position of longest consecutive pairings11
Pairings in 3prime end4
Position5UTR
2D Structure