Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGCAGCTGCAGCA
.....(((((((((((.((((&))))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_181552
GeneSymbolCUX1
Binding site6887,6903
Score0.923
Seed0
Au0.662
Energy-23.9
Binding len16
Me-13.666
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings15
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure