Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCAACCGTGAGATAGGAGAGTCTCTGGTACTAGCTGCT
..(((((((((((((..((((&))))))))))).......................)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001350482
GeneSymbolCAP1
Binding site2089,2130
Score0.846
Seed1
Au0.471
Energy-20.9
Binding len41
Me-5.19
Phylopstem0.5388669222222222
Phylopflank0.5687649475
Longest consecutive pairings11
Position of longest consecutive pairings30
Pairings in 3prime end6
Position3UTR
2D Structure