Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGGCTCCTTTCTGGGTAGA&GCCCTGACAGGAAGGGAGGAAGCCTGGTGA
(((((((((((((((((((...&))))........)))))))).))).)))).
Details
MiRNAhsa-miR-892b
RefseqIDNM_198269
GeneSymbolHIPK1
Binding site5923,5953
Score0.846
Seed1
Au0.397
Energy-23.3
Binding len30
Me-3.938
Phylopstem1.545604524137931
Phylopflank1.94656870125
Longest consecutive pairings8
Position of longest consecutive pairings10
Pairings in 3prime end5
Position3UTR
2D Structure