Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTAATGCTTCAAGGTGTAGACCTTTTAGCCGATGCTGTG
..(((((..((((((.(((((&.))))).))))))..))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_199440
GeneSymbolHSPD1
Binding site228,270
Score1.0
Seed0
Au0.515
Energy-21.5
Binding len21
Me-8.56
Phylopstem1.2814958333333333
Phylopflank1.0761372275000003
Longest consecutive pairings6
Position of longest consecutive pairings8
Pairings in 3prime end7
PositionCDS
2D Structure