Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTACTGAGCAGAAATATGTAACCTTAGACTCAGCCAGTTTCCTCTGCAGCTGCT
..(((((((((((((((((((&.))))))....)))))..........)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_199512
GeneSymbolCCDC80
Binding site3075,3131
Score0.923
Seed1
Au0.529
Energy-24.8
Binding len35
Me-4.957
Phylopstem0.1371638757575758
Phylopflank0.15100794125
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end8
PositionCDS
2D Structure