Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCAGACAACTGCAGAATGTAGA
(((((.((((((((((..(((&)))..))))))))))..))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001377491
GeneSymbolNBPF3
Binding site3371,3394
Score1.0
Seed0
Au0.529
Energy-23.0
Binding len23
Me-5.839
Phylopstem1.7847495000000002
Phylopflank0.9386304937499999
Longest consecutive pairings10
Position of longest consecutive pairings8
Pairings in 3prime end6
Position3UTR
2D Structure