Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTGGGTGACCACAGCAGCTGCAT
.((((((((((((((...(((&)))...)))))...))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001379226
GeneSymbolSHANK2
Binding site9212,9236
Score0.923
Seed1
Au0.397
Energy-21.9
Binding len24
Me-4.026
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end5
Position3UTR
2D Structure