Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTAAGGACCCAACTCTGACTAGCAGCTGCC
..((((((((((((.(.(((.&))).).))))............)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001382302
GeneSymbolUSP40
Binding site2244,2275
Score0.846
Seed1
Au0.397
Energy-21.8
Binding len31
Me-5.692
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end5
Position3UTR
2D Structure