Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TCATACTGCTGCCTTCCTACAGCTGCT
..(((((((.((....(((((&.)))))))..))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001352533
GeneSymbolPTPN20
Binding site1273,1300
Score0.846
Seed1
Au0.529
Energy-17.7
Binding len18
Me-9.314
Phylopstem0.4363135142857143
Phylopflank0.14234065225
Longest consecutive pairings7
Position of longest consecutive pairings10
Pairings in 3prime end5
Position3UTR
2D Structure