Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CTTTACAACAAATAATGCACAGAAAAATGCAGCCTATAATTTGCT
..((((((((((((((((((.&)))))))))..................))))))........))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001352687
GeneSymbolSMIM30
Binding site596,641
Score0.846
Seed1
Au0.662
Energy-16.7
Binding len45
Me-4.957
Phylopstem0.5900560363636363
Phylopflank0.6214963337500001
Longest consecutive pairings9
Position of longest consecutive pairings36
Pairings in 3prime end7
Position3UTR
2D Structure