Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCCCAGCTGCTCTGAGTTTGGGCTGCAAG
(((((((((((((((...((.&)).)))))))..........)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_014569
GeneSymbolZKSCAN5
Binding site3997,4026
Score0.846
Seed1
Au0.441
Energy-20.6
Binding len29
Me-4.171
Phylopstem0.18909214800000002
Phylopflank0.084312781
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure