Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTATTACTCAACCCAGTTGCAT
.((((((((.(((((..((((&))))......))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_014641
GeneSymbolMDC1
Binding site5178,5202
Score0.923
Seed1
Au0.441
Energy-21.7
Binding len24
Me-5.269
Phylopstem0.3378701
Phylopflank0.07551572
Longest consecutive pairings13
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure